SMODER documentation
====================

Welcome to the documentation for **SMODER**, a Python toolkit for spatial multi-omics deconvolution.

SMODER integrates spatial transcriptomics with an additional spatial modality, such as chromatin accessibility peaks or protein measurements, to infer cell-type composition and related multi-omic signals across spatial locations.

Contents
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.. toctree::
   :maxdepth: 2
   :caption: Main contents

   installation
   data
   tutorials
   api

Indices and tables
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* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`